INTERNATIONAL JOURNAL PUBLICATION
(† co-first, * co-corresponding)
2024
50. Park, S.†, Kim, M., and Lee, J.W.* “Optimizing nucleic acid delivery systems through barcode technology”, ACS Synth. Biol., (accepted) (2024)
49. Jeong, J., Park, H., Kwak, H.Y., No, J.-S., Jeon, H., Lee, J.W. and Kim, J.W. “Iterative Soft Decoding Algorithm for DNA Storage Using Quality Score and Redecoding”, IEEE Trans. Nanobioscience, 23(1):81-90 (2024)
48. Kim, W.†, Lee, S.†, Sung, B.H.*, Na, J.-G.* and Lee, J.W.* “Cell-free systems and genetic biosensors for accelerating enzyme and pathway prototyping”, Curr. Opin. Syst. Biol. (2024)
2023
47. Son, J., Lee, H., Lee, T., Sohn, H., Park, S.J., Na, J.-G., Seo, S.W., Lee, J.W., Hah, Y.Y. and Park, C. “Novel synthetic pathway for methyl 3-hydroxybutyrate from β-hydroxybutyric acid and methanol by enzymatic esterification”, J Ind Eng Chem, 123:355-360 (2023)
46. Kang, S., GAO, Y., Jeong, J., Park, S.-J., Kim, J.-W., No, J.-S., Jeon, H., Lee, J.W., Kim, S.H., Park, H. and No. A. “Generative Adversarial Networks for DNA Storage Channel Simulator”, IEEE Access, 11:3781-3793 (2023)
45. Seo, E.†, Choi, Y.-N.†, Shin, Y., Kim, D., and Lee, J.W.* “Design of synthetic promoters for cyanobacteria with generative deep-learning model”, Nucleic Acids Research, 51(13):7071–7082 (2023)
44. Gwon, D., Seo, E., and Lee, J.W.* “Construction of Synthetic Microbial Consortium for Violacein Production”, Biotechnol Bioprocess Eng., 1-10 (2023)
43. Ryu, M.†, Choi, H.†, Yoon, J., Choi, Y.-N., Lee, S., Kim, H., Chae, M., Lee, J.W., Kang, J., and Lee. H. “Silica-Nanoparticle Reinforced Lubricant-Infused Copper Substrates with Enhanced Lubricant Retention for Maintenance-Free Heat Exchangers”, Chem. Eng. J. 451:138657 (2023)
2022
42. Ye, D.-Y., Noh, M.H., Milito, A., Kim, M., Lee, J.W., Yang, J.-S. and Jung. G.Y. “Kinetic Compartmentalization by Unnatural Reaction for Itaconate Production”, Nat. Commun 13:5353 (2022)
41. Yoon, J., Zhang, X., Ryu, M., Kim, W.H., Ihm, K., Lee, J.W.*, Li, W.* and Li, H.* “Tailoring the hydrophilicity for delayed condensation frosting in antifogging coatings” ACS Appl. Mater. Interfaces, 30(14):35064-35073 (2022)
40. Choi, Y.-N.†, Cho, N.†, Lee, K., Gwon, D., Lee, J.W.*, Lee, J.* “Programmable synthesis of bio-based materials using cell-free systems” Adv. Mater. 35(4):2203433 (2022)
39. Kim, M.†, Jeon, K.†, Kim, W.H., Lee, J.W., Hwang, Y.-H.*, and Lee, H* “Biocompatible amphiphilic Janus nanoparticles with enhanced interfacial properties for colloidal surfactants”, J. Colloid Interface Sci., 616: 488-498 (2022).
38. Kim, H.†, Lee, S.†, Choi, Y.-N., Shin, Y., Yoon, J., Ryu, M., Lee, J.W.* , and Lee, H.* “Durable superhydrophobic Poly(vinylidene fluoride) (PVDF)-based nanofibrous membranes for reusable air filters”, ACS Appl. Polym. Mater., 4(1): 338-347 (2022).
2021
37. Gwon, D.†, Seok, J.Y.†, Jung, G.Y., and Lee, J.W.* “Biosensor-assisted adaptive laboratory evolution for violacein production”, Int. J. Mol. Sci., 22(12): 6594 (2021).
36. Choi, Y.-N., Shin, Y., Park, J.M.*, and Lee, J.W.* “Cell-free transcription-coupled CRISPR/Cas12a assay for prototyping cyanobacterial promoters”, ACS Synth. Biol., 10(6): 1300-1307 (2021).
35. Jeong, J.*, Park, S.J., Kim, J.-W., No, J.-S.*, Jeon, H.H., Lee, J.W.*, No, A., Kim, S., and Park, H.* “Cooperative sequence clustering and decoding for DNA storage system with fountain codes”, Bioinformatics, 37(19): 3136-3143.
34. Park, S. and Lee, J.W.* “Detection of coronaviruses using RNA toehold switch sensors”, Int. J. Mol. Sci., 22(4): 1772 (2021).
2020
33. Woo, C.H.†, Jang, S.†, Shin, G., Jung, G.Y.*, and Lee, J.W.* “Sensitive fluorescence detection of SARS-CoV-2 RNA in clinical samples via one-pot isothermal ligation and transcription”, Nat. Biomed. Eng., 4:1168-1179 (2020).
32. Jung, J.K., Alam, K.K., Verosloff, M.S., Capdevila, D.A., Desmau, M., Clauer, P.R., Lee, J.W., Nguyen, P.Q., Pastén, P.A., Matiasek, S.J., Gaillard, J.-F., Giedroc, D.P., Collins, J.J., and Lucks, J.B. “Cell-free bionsensors for rapid detection of water contaminants”, Nat. Biotechnol., 38:1451-1459 (2020).
31. Kim, D., and Lee, J.W.* “Genetic biocontainment systems for the safe use of engineered microorganisms.”, Biotechnol. Bioproc. E., 25:974-984 (2020).
30. Ganesh, I., Gwon, D., and Lee, J.W.* “Gas-sensing transcriptional regulators”, Biotech. J., 15,1900345 (2020).
29. Choi, Y.-N., Lee, J.W., Kim, J.W., and Park, J.M. “Acetyl-CoA-derived biofuel and biochemical production in cyanobacteria: a mini review”, J. Appl. Phycol., 32:1643-1653 (2020).
2018
28. Lee, J.W.†, Chan, C.T.Y.*, Slomovic, S., and Collins, J.J. “Next-generation biocontainment systems for engineered organisms”, Nat. Chem. Biol., 14:530-537 (2018).
2017
27. Gootenberg, J.S., Abudayyeh, O.O., Lee, J.W., Essletzbichler, P., Dy A., Joung, J., Verdine, V., Donghia, N., Daringer, N.M., Freije, C.A., Myhrvold, C., Bhattacharyya, R.P., Livny, J., Regev, A., Koonin, E.V., Hung, D.T., Sabeti, P.C., Collins, J.J., and Zhang, F. “Nucleic acid detection with CRISPR-Cas13a/C2c2”, Science, 356(6336): 438-442 (2017).
2016
26. Lee, J.W., Yi, J., Kim, T.Y., Choi, S., Ahn, J.H., Song, H., Lee, M.-H., and Lee, S.Y. “Homo-succinic acid production by metabolically engineered Mannheimia succiniciproducens”, Metab. Eng., 38: 409-417 (2016).
25. Pardee, K.†, Slomovic, S†, Nguyen, P.Q.†, Lee, J.W.†, Donghia, N., Burrill, D., Ferrante, T., McSorley, F., Furuta, Y., Vernet, A., Lewandowski, M., Boddy, C.N., Joshi, N.S., and Collins, J.J. “Portable, On-demand Biomolecular Manufacturing”, Cell, 167(1): 248-259 (2016).
24. Lee, J.W., Gyorgy, A., Cameron, D.E., Pyenson, N., Choi, K.R., Way, J.C., Silver, P.A., Del Vecchio, D., and Collins, J.J., “Creating single-copy genetic circuits”, Mol. Cell, 63: 329-336 (2016).
23. Pardee, K., Green, A.A., Takahashi, M.K., Braff, D., Lambert, G., Lee, J.W., Ferrante, T., Ma, D., Donghia, N., Fan, M., Daringer, N.M., Bosch, I., Dudley, D.M., O’Connor, D.H., Gehrke, L., and Collins, J.J. “Rapid, low-cost detection of Zika virus using programmable biomolecular components”, Cell, 165(5):1255-1266 (2016).
22. Chan, C.T.Y.†, Lee, J.W.†, Cameron, D. E.†, Bashor, C. J., and Collins, J. J. “Deadman and Passcode microbial kill switches for bacterial containment”, Nat. Chem. Biol., 12:82-86 (2016).
21. Choi, S., Song, H., Lim, S.W., Kim, T.Y., Ahn, J.H., Lee, J.W., Lee, M.-H., and Lee, S.Y. “Highly selective production of succinic acid by metabolically engineered Mannheimia succiniciproducensand its efficient purification”, Biotechnol. Bioeng., 113(10):2168-77 (2016).
2015
20. Jung, K., Choi, J.-D.-R., Lee, D., Seo, C., Lee, J.W., Lee, S.Y., Chang, H.N., and Kim, Y.-C., “Permeation characteristics of volatile fatty acids solution by forward osmosis”, Process Biochem., 50:669-677 (2015).
2012
19. Lee, J.W., Na, D., Park, J. M., Lee, J., Choi, S., and Lee, S.Y. “Systems metabolic engineering of microorganisms for natural and nonnatural chemicals”, Nat. Chem. Biol., 8:536-546 (2012).
2011
18. Lee, S.Y., Sohn, S.B., Park, J.M., Lee, J.W., “Biorefinery Research in Korea”, Asia Pacific Biotech. News, 15(12): 15-21 (2011). (Journal cover paper)
17. Lee, J.W., Kim, H.U., Choi, S., Yi, J., and Lee, S.Y. “Microbial production of building block chemicals and polymers”, Curr. Opin. Biotechnol., 22(6):758–767 (2011).
16. Lee, J.W., Kim, T.Y., Jang, Y.S., Choi, S., and Lee, S.Y. “Systems metabolic engineering for chemicals and materials”, Trends Biotechnol., 29(8): 370-378 (2011). (Journal cover paper)
15. Park, J.H., Jang, Y.S., Lee, J.W., and Lee, S.Y. “Escherichia coli W as a new platform strain for the enhanced production of L-valine by systems metabolic engineering”, Biotechnol. Bioeng., 108(5):1140-1147 (2011).
14. Han, M.-J.†, Lee, J. W.†, Lee, S. Y., “Understanding and engineering microbial cells based on proteomics and its combined analyses”, Proteomics, 11(4): 721-743 (2011).
13. Han, M.-J., Yun, H., Lee, J. W., Lee, Y. H., Lee, S. Y., Yoo, J.-S., Kim, J. F. Hur, C.-G., “Genome-wide identification of the subcellular localization of the Escherichia coli B proteome using experimental and computational methods”, Proteomics, 11(7): 1213-1227 (2011).
2010
12. Lee, J.W., Choi, S., Park, J.H., Vickers, C., Nielsen, L.K., and Lee, S.Y., “Development of sucrose-utilizing Escherichia coli K-12 strain by cloning β-fructofuranosidases and its application for L-threonine production”, Appl. Microbiol. Biotechnol., 88(4): 905-913 (2010).
11. Lee, J.W., Choi, S., Kim, J.M., and Lee, S.Y., “Mannheimia succiniciproducens phosphotransferase system for sucrose utilization “, Appl. Environ. Microbiol., 76(5): 1699-1703 (2010).
10. Lee, J.W. and Lee, S.Y., “Proteome-based physiological analysis of the metabolically engineered succinic acid producer Mannheimia succiniciproducens LPK7″, Bioprocess Biosyst. Eng., 33(1): 97-107 (2010).
2008
9. Lee, S.Y., Kim, J.M., Song, H., Lee, J.W., Kim, T.Y., and Jang, Y.-S., “From genome sequence to integrated bioprocess for succinic acid production by Mannheimia succiniciproducens“, Appl. Microbiol. Biotechnol., 79(1): 11-22 (2008).
8. Han, M. -J., Lee, J. W., Lee, S. Y., and Yoo, J. S. “Proteome-Level Responses of Escherichia coli to Long-Chain Fatty Acids and Use of Fatty Acid Inducible Promoter in Protein Production”, J. Biomed. Biotechnol., Article ID 735101, (2008).
2007
7. Yun, H., Lee, J. W., Jeong, J., Chung, J., Park, J. M., Myoung, H. N., and Lee, S. Y., “EcoProDB: the Escherichia coli protein database”, Bioinformatics, 23(18): 2501-2503 (2007).
6. Jang, Y.-S., Jung, Y.R., Lee, S.Y., Kim, J.M., Lee, J.W., Oh, D.-B., Kang, H.A., Kwon, O., Jang, S.H., Song, H., Lee, S.J., and Kang, K.Y. “Construction and characterization of shuttle vectors for succinic acid producing rumen bacteria”, Appl. Environ. Microbiol., 73(17): 5411-5420 (2007).
5. Song, H., Lee, J.W., Choi, S., You, J.K., Hong, W.H., and Lee, S.Y., “Effects of dissolved CO2 levels on the growth of Mannheimia succiniciproducens and succinic acid production”, Biotechnol. Bioeng., 98(6): 1296-1304 (2007).
2006
4. Han, M.-J., Park, S.J., Lee, J.W., Min, B.H., Lee, S.Y., Kim, S.-J., and Yoo, J.-S. “Analysis of poly(3-hydroxybutyrate) granule-associated proteome in recombinant Escherichia coli“, J. Microbiol. Biotechnol., 16(6): 901-910 (2006).
3. Lee, J.W., Lee, S.Y., Song, H., and Yoo, J.S. “The proteome of Mannheimia succiniciproducens, a capnophilic rumen bacterium”, Proteomics, 6: 3550-3566. (2006)
2005
2. Han, M.-J., Lee, J.W., and Lee, S.Y., “Enhanced Proteome Profiling by Inhibiting Proteolysis with Small Heat Shock Proteins”, J. Proteome Res., 4(6): 2429-2434. (2005)
1. Park, S.J., Lee, S.Y., Cho, J., Kim, T.Y., Lee, J.W., Park, J.H., and Han, M.-J., “Global physiological understanding and metabolic engineering of microorganisms based on omics studies”, Appl. Microbiol. Biotechnol., 68:567-579. (2005)